Gene: ATR0752G016 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0752G016
Transcript Identifier
ATR0752G016.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00062 : 291380-304879 : negative

Family

Gene family
HOM04M003288
(51 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00062.19
idevm_27.TU.AmTr_v1.0_scaffold00062.19.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00062.19
nameevm_27.model.AmTr_v1.0_scaffold00062.19
pacid31557271
tidevm_27.model.AmTr_v1.0_scaffold00062.19.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006568 IEAInterProtryptophan metabolic process
GO:0000162 IEAInterProtryptophan biosynthetic process
GO:0009684 IEAPLAZA Integrative Orthologyindoleacetic acid biosynthetic processAT5G54810
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G54810
GO:0006979 IEAPLAZA Integrative Orthologyresponse to oxidative stressAT5G54810

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004834 IEAInterProtryptophan synthase activity
GO:0019904 IEAPLAZA Integrative Orthologyprotein domain specific bindingAT5G54810

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT5G54810
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT4G27070
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT4G27070
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaAT4G27070

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR006654Tryptophan synthase, beta chain
IPR023026Tryptophan synthase beta chain/beta chain-like
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzyme
IPR006653Tryptophan synthase, beta chain, conserved site

Mapman id Description
4.1.5.3.5.2.Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit beta
No SignalP domains detected for this gene.