Gene: ATR0730G188 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0730G188
Transcript Identifier
ATR0730G188.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00058 : 2079121-2082664 : negative

Family

Gene family
HOM04M004240
(43 genes in 28 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00058.108
idevm_27.TU.AmTr_v1.0_scaffold00058.108.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00058.108
nameevm_27.model.AmTr_v1.0_scaffold00058.108
pacid31559228
tidevm_27.model.AmTr_v1.0_scaffold00058.108.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0033468 IEAPLAZA Integrative OrthologyCMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic processAT1G53000
GO:0009555 IEAPLAZA Integrative Orthologypollen developmentAT1G53000
GO:0009860 IEAPLAZA Integrative Orthologypollen tube growthAT1G53000

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008690 IEAPLAZA Integrative Orthology3-deoxy-manno-octulosonate cytidylyltransferase activityAT1G53000

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT1G53000
GO:0005737 IEAPLAZA Homology (enrichment)cytoplasm
GO:0031307 IEAPLAZA Integrative Orthologyintegral component of mitochondrial outer membraneAT1G53000

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR029044Nucleotide-diphospho-sugar transferases
IPR003329Acylneuraminate cytidylyltransferase

Mapman id Description
21.3.3.1.2.3.Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) biosynthesis.CMP-KDO synthetase
No SignalP domains detected for this gene.