PLAZA 4.0 Monocots gene overview : ATR0686G222

Gene: ATR0686G222 (Amborella trichopoda)

Overview

Gene Identifier: ATR0686G222
Transcript Identifier: ATR0686G222.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00005 : 9271625-9274161 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00005.249
id	evm_27.TU.AmTr_v1.0_scaffold00005.249.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00005.249
name	evm_27.model.AmTr_v1.0_scaffold00005.249
pacid	31576001
tid	evm_27.model.AmTr_v1.0_scaffold00005.249.v1.0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.