Gene: ATR0681G267 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0681G267
Transcript Identifier
ATR0681G267.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00007 : 847503-861279 : positive

Family

Gene family
HOM04M000365
(308 genes in 29 species)
specific family
Subfamily
ORTHO04M000348
(251 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00007.42
idevm_27.TU.AmTr_v1.0_scaffold00007.42.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00007.42
nameevm_27.model.AmTr_v1.0_scaffold00007.42
pacid31557768
tidevm_27.model.AmTr_v1.0_scaffold00007.42.v1.0

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042393 IEAInterProhistone binding
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT5G05610
GO:0044212 IEAPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT5G05610
GO:0035064 IEAPLAZA Integrative Orthologymethylated histone bindingAT5G05610

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT3G11200
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G11200

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR021998Alfin
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
15.5.8.RNA biosynthesis.transcriptional regulation.transcription factor (Alfin)
No SignalP domains detected for this gene.