Gene: ATR0665G173 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0665G173
Transcript Identifier
ATR0665G173.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00002 : 9990531-9992003 : positive

Family

Gene family
HOM04M000154
(573 genes in 27 species)
specific family
Subfamily
ORTHO04M002440
(70 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00002.569
idevm_27.TU.AmTr_v1.0_scaffold00002.569.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00002.569
nameevm_27.model.AmTr_v1.0_scaffold00002.569
pacid31562493
tidevm_27.model.AmTr_v1.0_scaffold00002.569.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048354 IEAPLAZA Integrative Orthologymucilage biosynthetic process involved in seed coat developmentAT3G46550
GO:0010192 IEAPLAZA Integrative Orthologymucilage biosynthetic processAT3G46550
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT3G46550
GO:0009825 IEAPLAZA Integrative Orthologymultidimensional cell growthAT3G46550
GO:0009738 IEAPLAZA Integrative Orthologyabscisic acid-activated signaling pathwayAT3G46550

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030247 IEAPLAZA Integrative Orthologypolysaccharide bindingAT3G46550

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0046658 IEAPLAZA Integrative Orthologyanchored component of plasma membraneAT3G46550
GO:0031225 IEAPLAZA Integrative Orthologyanchored component of membraneAT3G46550
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT3G46550
GO:0009897 IEAPLAZA Integrative Orthologyexternal side of plasma membraneAT3G46550

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000782FAS1 domain
IPR033254Fasciclin-like arabinogalactan protein

Mapman id Description
21.4.1.1.3.Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein (AGP) activities.fasciclin-type AGP (FLA)
26.6.1.4.External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.regulatory factor (SOS5)
No SignalP domains detected for this gene.