Gene: ATR0665G144 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0665G144
Transcript Identifier
ATR0665G144.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00002 : 10149967-10152801 : positive

Family

Gene family
HOM04M000001
(8521 genes in 28 species)
specific family
Subfamily
ORTHO04M000001
(5133 genes in 26 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00002.581
idevm_27.TU.AmTr_v1.0_scaffold00002.581.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00002.581
nameevm_27.model.AmTr_v1.0_scaffold00002.581
pacid31562629
tidevm_27.model.AmTr_v1.0_scaffold00002.581.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016125 IEAPLAZA Integrative Orthologysterol metabolic processAT4G14850
GO:0031425 IEAPLAZA Integrative Orthologychloroplast RNA processingAT2G02980
GO:0010305 IEAPLAZA Integrative Orthologyleaf vascular tissue pattern formationAT4G18750
GO:0010588 IEAPLAZA Integrative Orthologycotyledon vascular tissue pattern formationAT4G18750
GO:0010027 IEAPLAZA Integrative Orthologythylakoid membrane organizationAT3G22690
GO:0010207 IEAPLAZA Integrative Orthologyphotosystem II assemblyAT3G22690
GO:0040007 IEAPLAZA Integrative OrthologygrowthAT1G15510
GO:1900865 IEAPLAZA Integrative Orthologychloroplast RNA modificationAT4G18750
GO:0000963 IEAPLAZA Integrative Orthologymitochondrial RNA processingAT4G30700
GO:0016556 IEAPLAZA Integrative OrthologymRNA modificationAT1G11290
GO:0016554 IEAPLAZA Integrative Orthologycytidine to uridine editingAT4G30700
GO:0031930 IEAPLAZA Integrative Orthologymitochondria-nucleus signaling pathwayAT1G17630
GO:0019288 IEAPLAZA Integrative Orthologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathwayAT4G14850
GO:0019287 IEAPLAZA Integrative Orthologyisopentenyl diphosphate biosynthetic process, mevalonate pathwayAT4G14850
GO:0050790 IEAPLAZA Integrative Orthologyregulation of catalytic activityAT4G14850
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT4G18750
GO:0048564 IEAPLAZA Integrative Orthologyphotosystem I assemblyAT3G22690
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT4G14850
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT3G22690
GO:0009416 IEAPLAZA Integrative Orthologyresponse to light stimulusAT1G15510
GO:0080156 IEAPLAZA Integrative Orthologymitochondrial mRNA modificationAT3G12770
GO:0009658 IEAPLAZA Integrative Orthologychloroplast organizationAT1G15510
GO:0010380 IEAPLAZA Integrative Orthologyregulation of chlorophyll biosynthetic processAT3G22690
GO:0009451 IEAPLAZA Integrative OrthologyRNA modificationAT5G13270
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT5G03800
GO:0010087 IEAPLAZA Integrative Orthologyphloem or xylem histogenesisAT4G18750

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0008270 IEAInterProzinc ion binding
GO:0034046 IEAPLAZA Integrative Orthologypoly(G) bindingAT4G14850
GO:0004519 IEAPLAZA Integrative Orthologyendonuclease activityAT1G11290

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT3G26782
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT2G02980

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011990Tetratricopeptide-like helical domain
IPR032867DYW domain
IPR002885Pentatricopeptide repeat

Mapman id Description
16.12.5.5.13.RNA processing.organelle machinery.RNA editing.plastidial RNA editing factor activities (PPR-type).RNA editing factor (OTP86)
No SignalP domains detected for this gene.