Gene: ATR0661G024 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0661G024
Transcript Identifier
ATR0661G024.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00001 : 4621435-4622146 : positive

Family

Gene family
HOM04M000833
(160 genes in 27 species)
specific family
Subfamily
ORTHO04M000717
(154 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00001.233
idevm_27.TU.AmTr_v1.0_scaffold00001.233.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00001.233
nameevm_27.model.AmTr_v1.0_scaffold00001.233
pacid31551009
tidevm_27.model.AmTr_v1.0_scaffold00001.233.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048480 IEAPLAZA Integrative Orthologystigma developmentAT3G51060
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT3G51060
GO:0048467 IEAPLAZA Integrative Orthologygynoecium developmentAT1G75520
GO:0009739 IEAPLAZA Integrative Orthologyresponse to gibberellinAT5G66350
GO:0048364 IEAPLAZA Tree-based Orthologyroot developmentAT5G12330
GO:0009938 IEAPLAZA Integrative Orthologynegative regulation of gibberellic acid mediated signaling pathwayAT5G66350
GO:0009733 IEAPLAZA Tree-based Orthologyresponse to auxinAT5G12330
GO:0048479 IEAPLAZA Integrative Orthologystyle developmentAT3G51060
GO:0009740 IEAPLAZA Integrative Orthologygibberellic acid mediated signaling pathwayAT5G66350
GO:0010051 IEAPLAZA Integrative Orthologyxylem and phloem pattern formationAT3G51060
GO:0009299 IEAPLAZA Integrative OrthologymRNA transcriptionAT1G19790
GO:0010252 IEAPLAZA Integrative Orthologyauxin homeostasisAT3G51060

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046982 IEAPLAZA Integrative Orthologyprotein heterodimerization activityAT5G66350
GO:0003700 IEAPLAZA Integrative Orthologytranscription factor activity, sequence-specific DNA bindingAT5G66350
GO:0003677 IEAPLAZA Integrative OrthologyDNA bindingAT3G51060
GO:0042803 IEAPLAZA Tree-based Orthologyprotein homodimerization activityAT5G12330

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G66350

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR007818SHI protein family
IPR006510Zinc finger, lateral root primordium type 1
IPR006511SHORT INTERNODES, C-terminal

Mapman id Description
15.5.47.RNA biosynthesis.transcriptional regulation.transcription factor (SRS)
No SignalP domains detected for this gene.