Gene: ATR0629G005 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0629G005
Transcript Identifier
ATR0629G005.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00026 : 5835859-5884495 : positive

Family

Gene family
HOM04M000332
(326 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00026.137
idevm_27.TU.AmTr_v1.0_scaffold00026.137.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00026.137
nameevm_27.model.AmTr_v1.0_scaffold00026.137
pacid31554160
tidevm_27.model.AmTr_v1.0_scaffold00026.137.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0010089 IEAPLAZA Integrative Orthologyxylem developmentAT4G08150
GO:0001708 IEAPLAZA Integrative Orthologycell fate specificationAT4G08150
GO:0045165 IEAPLAZA Integrative Orthologycell fate commitmentAT4G08150
GO:0010051 IEAPLAZA Integrative Orthologyxylem and phloem pattern formationAT4G08150

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0043565 IEAInterProsequence-specific DNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G08150

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR005541KNOX2
IPR005540KNOX1
IPR005539ELK domain
IPR008422Homeobox KN domain
IPR017970Homeobox, conserved site
IPR001356Homeobox domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.4.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX)
No SignalP domains detected for this gene.