Gene: ATR0626G378 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0626G378
Transcript Identifier
ATR0626G378.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00025 : 3643293-3650429 : positive

Family

Gene family
HOM04M000105
(811 genes in 27 species)
specific family
Subfamily
ORTHO04M001480
(95 genes in 24 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00025.251
idevm_27.TU.AmTr_v1.0_scaffold00025.251.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00025.251
nameevm_27.model.AmTr_v1.0_scaffold00025.251
pacid31566337
tidevm_27.model.AmTr_v1.0_scaffold00025.251.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0009725 IEAInterProresponse to hormone
GO:0010311 IEAPLAZA Integrative Orthologylateral root formationAT1G19220
GO:0048527 IEAPLAZA Integrative Orthologylateral root developmentAT1G19220
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT1G19220
GO:0009723 IEAPLAZA Integrative Orthologyresponse to ethyleneAT1G19220
GO:0040008 IEAPLAZA Integrative Orthologyregulation of growthAT5G20730
GO:0009630 IEAPLAZA Integrative OrthologygravitropismAT5G20730
GO:0009785 IEAPLAZA Integrative Orthologyblue light signaling pathwayAT5G20730
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT1G19220
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT5G20730
GO:0009638 IEAPLAZA Integrative OrthologyphototropismAT5G20730

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0005515 IEAInterProprotein binding
GO:0046983 IEAPLAZA Integrative Orthologyprotein dimerization activityAT1G19220
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT1G19220

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003340B3 DNA binding domain
IPR015300DNA-binding pseudobarrel domain
IPR033389AUX/IAA domain
IPR010525Auxin response factor
IPR000270PB1 domain

Mapman id Description
15.5.5.1.RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF)
No SignalP domains detected for this gene.