Gene: ATR0626G366 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0626G366
Transcript Identifier
ATR0626G366.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00025 : 3698623-3715754 : positive

Family

Gene family
HOM04M000780
(168 genes in 29 species)
specific family
Subfamily
ORTHO04M002225
(75 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00025.254
idevm_27.TU.AmTr_v1.0_scaffold00025.254.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00025.254
nameevm_27.model.AmTr_v1.0_scaffold00025.254
pacid31566396
tidevm_27.model.AmTr_v1.0_scaffold00025.254.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006401 IEAInterProRNA catabolic process
GO:0060149 IEAPLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencingAT2G06990
GO:0006397 IEAPLAZA Integrative OrthologymRNA processingAT2G06990
GO:0010093 IEAPLAZA Integrative Orthologyspecification of floral organ identityAT2G06990
GO:0016070 IEAPLAZA Integrative OrthologyRNA metabolic processAT2G06990

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0005524 IEAInterProATP binding
GO:0003723 IEAInterProRNA binding
GO:0003724 IEAInterProRNA helicase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005654 IEAPLAZA Integrative OrthologynucleoplasmAT2G06990
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT2G06990
GO:0016607 IEAPLAZA Integrative Orthologynuclear speckAT2G06990

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR025696rRNA-processing arch domain
IPR012961ATP-dependent RNA helicase Ski2, C-terminal
IPR001650Helicase, C-terminal
IPR011545DEAD/DEAH box helicase domain
IPR016438ATP-dependent RNA helicase Ski2
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
16.8.1.2.3.1.RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2
No SignalP domains detected for this gene.