Gene: ATR0626G149 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0626G149
Transcript Identifier
ATR0626G149.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00025 : 3593542-3610414 : positive

Family

Gene family
HOM04M002464
(66 genes in 28 species)
specific family
Subfamily
ORTHO04M003009
(60 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00025.250
idevm_27.TU.AmTr_v1.0_scaffold00025.250.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00025.250
nameevm_27.model.AmTr_v1.0_scaffold00025.250
pacid31566416
tidevm_27.model.AmTr_v1.0_scaffold00025.250.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396 IEAPLAZA Integrative OrthologyRNA processingAT4G16130
GO:0019566 IEAPLAZA Integrative Orthologyarabinose metabolic processAT4G16130

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005534 IEAInterProgalactose binding
GO:0005524 IEAInterProATP binding
GO:0009702 IEAPLAZA Integrative OrthologyL-arabinokinase activityAT4G16130
GO:0003824 IEAPLAZA Integrative Orthologycatalytic activityAT4G16130

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT4G16130
GO:0009506 IEAPLAZA Integrative OrthologyplasmodesmaAT4G16130

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013750GHMP kinase, C-terminal domain
IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
IPR019539Galactokinase galactose-binding domain
IPR006204GHMP kinase N-terminal domain
IPR012369Galactokinase, glycosyltransferase
IPR020568Ribosomal protein S5 domain 2-type fold

Mapman id Description
3.13.7.2.1.Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-arabinose biosynthesis.salvage biosynthesis.L-arabinose kinase
No SignalP domains detected for this gene.