Gene: ATR0618G435 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0618G435
Transcript Identifier
ATR0618G435.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00029 : 1117121-1139819 : positive

Family

Gene family
HOM04M004823
(39 genes in 25 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00029.87
idevm_27.TU.AmTr_v1.0_scaffold00029.87.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00029.87
nameevm_27.model.AmTr_v1.0_scaffold00029.87
pacid31549846
tidevm_27.model.AmTr_v1.0_scaffold00029.87.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045454 IEAInterProcell redox homeostasis
GO:0006397 IEAPLAZA Integrative OrthologymRNA processingAT3G19760
GO:0001666 IEAPLAZA Integrative Orthologyresponse to hypoxiaAT3G19760

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0005524 IEAInterProATP binding
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT3G19760
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT3G19760

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005654 IEAPLAZA Integrative OrthologynucleoplasmAT3G19760
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT3G19760
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT3G19760
GO:0016607 IEAPLAZA Integrative Orthologynuclear speckAT3G19760
GO:0035145 IEAPLAZA Integrative Orthologyexon-exon junction complexAT3G19760
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G19760

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR011545DEAD/DEAH box helicase domain
IPR001650Helicase, C-terminal
IPR003774Protein of unknown function UPF0301
IPR014014RNA helicase, DEAD-box type, Q motif
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR013766Thioredoxin domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR012336Thioredoxin-like fold

Mapman id Description
17.3.1.1.1.Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.helicase component eIF4A3
No SignalP domains detected for this gene.