Gene: ATR0618G137 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0618G137
Transcript Identifier
ATR0618G137.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00029 : 3339638-3341310 : negative

Family

Gene family
HOM04M000133
(668 genes in 29 species)
specific family
Subfamily
ORTHO04M000286
(282 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00029.256
idevm_27.TU.AmTr_v1.0_scaffold00029.256.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00029.256
nameevm_27.model.AmTr_v1.0_scaffold00029.256
pacid31550082
tidevm_27.model.AmTr_v1.0_scaffold00029.256.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007017 IEAInterPromicrotubule-based process
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionAT5G62690
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G23860

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003924 IEAInterProGTPase activity
GO:0005200 IEAInterProstructural constituent of cytoskeleton
GO:0005525 IEAInterProGTP binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G23860

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005874 IEAInterPromicrotubule
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT5G62690
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT5G62690
GO:0005794 IEAPLAZA Integrative OrthologyGolgi apparatusAT5G23860
GO:0005618 IEAPLAZA Integrative Orthologycell wallAT5G62690
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT5G23860
GO:0045298 IEAPLAZA Integrative Orthologytubulin complexAT5G62700
GO:0009506 IEAPLAZA Integrative OrthologyplasmodesmaAT5G62690

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR018316Tubulin/FtsZ, 2-layer sandwich domain
IPR003008Tubulin/FtsZ, GTPase domain
IPR000217Tubulin
IPR002453Beta tubulin
IPR013838Beta tubulin, autoregulation binding site
IPR017975Tubulin, conserved site
IPR008280Tubulin/FtsZ, C-terminal

Mapman id Description
20.1.1.2.Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin
No SignalP domains detected for this gene.