Gene: ATR0598G310 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0598G310
Transcript Identifier
ATR0598G310.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00024 : 2581913-2584396 : negative

Family

Gene family
HOM04M000108
(781 genes in 27 species)
specific family
Subfamily
ORTHO04M000221
(318 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00024.119
idevm_27.TU.AmTr_v1.0_scaffold00024.119.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00024.119
nameevm_27.model.AmTr_v1.0_scaffold00024.119
pacid31558704
tidevm_27.model.AmTr_v1.0_scaffold00024.119.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0010321 IEAPLAZA Integrative Orthologyregulation of vegetative phase changeAT4G17460
GO:0080127 IEAPLAZA Integrative Orthologyfruit septum developmentAT4G17460
GO:0048507 IEAPLAZA Integrative Orthologymeristem developmentAT4G17460
GO:0009641 IEAPLAZA Integrative Orthologyshade avoidanceAT4G16780
GO:0016573 IEAPLAZA Integrative Orthologyhistone acetylationAT4G17460
GO:0010015 IEAPLAZA Integrative Orthologyroot morphogenesisAT4G17460
GO:0010016 IEAPLAZA Integrative Orthologyshoot system morphogenesisAT4G16780
GO:0010017 IEAPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16780
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT4G17460
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT4G17460
GO:0010218 IEAPLAZA Integrative Orthologyresponse to far red lightAT4G16780
GO:0048467 IEAPLAZA Integrative Orthologygynoecium developmentAT4G17460
GO:0009826 IEAPLAZA Integrative Orthologyunidimensional cell growthAT4G16780
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT4G16780
GO:0003006 IEAPLAZA Integrative Orthologydevelopmental process involved in reproductionAT4G17460
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT4G16780
GO:0009734 IEAPLAZA Integrative Orthologyauxin-activated signaling pathwayAT5G47370
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT4G16780
GO:0009416 IEAPLAZA Integrative Orthologyresponse to light stimulusAT4G17460
GO:0009735 IEAPLAZA Integrative Orthologyresponse to cytokininAT4G16780
GO:0010582 IEAPLAZA Integrative Orthologyfloral meristem determinacyAT4G17460
GO:0008283 IEAPLAZA Integrative Orthologycell proliferationAT4G16780

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0003700 IEAInterProtranscription factor activity, sequence-specific DNA binding
GO:0043565 IEAInterProsequence-specific DNA binding
GO:0010485 IEAPLAZA Integrative OrthologyH4 histone acetyltransferase activityAT4G17460
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G17460
GO:0004402 IEAPLAZA Integrative Orthologyhistone acetyltransferase activityAT4G17460
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT4G16780
GO:0043621 IEAPLAZA Integrative Orthologyprotein self-associationAT4G17460
GO:0016407 IEAPLAZA Integrative Orthologyacetyltransferase activityAT4G17460
GO:0010484 IEAPLAZA Integrative OrthologyH3 histone acetyltransferase activityAT4G17460

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0000123 IEAPLAZA Integrative Orthologyhistone acetyltransferase complexAT4G17460
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT4G17460

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001356Homeobox domain
IPR003106Leucine zipper, homeobox-associated
IPR006712HD-ZIP protein, N-terminal
IPR017970Homeobox, conserved site
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.1.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II)
No SignalP domains detected for this gene.