Gene: ATR0584G136 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0584G136
Transcript Identifier
ATR0584G136.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00017 : 5311832-5320239 : positive

Family

Gene family
HOM04M005390
(36 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00017.199
idevm_27.TU.AmTr_v1.0_scaffold00017.199.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00017.199
nameevm_27.model.AmTr_v1.0_scaffold00017.199
pacid31570133
tidevm_27.model.AmTr_v1.0_scaffold00017.199.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000338 IEAInterProprotein deneddylation
GO:0010387 IEAInterProCOP9 signalosome assembly
GO:0009416 IEAPLAZA Integrative Orthologyresponse to light stimulusAT4G14110
GO:0009753 IEAPLAZA Integrative Orthologyresponse to jasmonic acidAT4G14110
GO:0009640 IEAPLAZA Integrative OrthologyphotomorphogenesisAT4G14110

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004222 IEAPLAZA Integrative Orthologymetalloendopeptidase activityAT4G14110
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G14110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0008180 IEAInterProCOP9 signalosome
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G14110

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR033205COP9 signalosome, subunit CSN8
IPR033464CSN8/PSMD8/EIF3K

Mapman id Description
19.2.3.3.1.8.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.RUB deconjugation of neddylated cullin.COP9 signalosome complex.component CSN8
No SignalP domains detected for this gene.