Gene: ATR0314G007 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0314G007
Transcript Identifier
ATR0314G007.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00108 : 1482268-1485657 : negative

Family

Gene family
HOM04M003109
(54 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00108.27
idevm_27.TU.AmTr_v1.0_scaffold00108.27.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00108.27
nameevm_27.model.AmTr_v1.0_scaffold00108.27
pacid31556435
tidevm_27.model.AmTr_v1.0_scaffold00108.27.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:1990619 IEAPLAZA Integrative Orthologyhistone H3-K9 deacetylationAT3G52250
GO:1900055 IEAPLAZA Integrative Orthologyregulation of leaf senescenceAT3G52250
GO:0010582 IEAPLAZA Integrative Orthologyfloral meristem determinacyAT3G52250
GO:2000617 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K9 acetylationAT3G52250
GO:0000122 IEAPLAZA Integrative Orthologynegative regulation of transcription from RNA polymerase II promoterAT3G52250

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT3G52250

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001005SANT/Myb domain
IPR017884SANT domain
IPR009057Homeobox domain-like

Mapman id Description
12.3.2.1.4.2.Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.component PWR
No SignalP domains detected for this gene.