Gene: ATR0069G056 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0069G056
Transcript Identifier
ATR0069G056.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00117 : 278892-340689 : positive

Family

Gene family
HOM04M000133
(668 genes in 29 species)
specific family
Subfamily
ORTHO04M005200
(42 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00117.8
idevm_27.TU.AmTr_v1.0_scaffold00117.8.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00117.8
nameevm_27.model.AmTr_v1.0_scaffold00117.8
pacid31555990
tidevm_27.model.AmTr_v1.0_scaffold00117.8.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007020 IEAInterPromicrotubule nucleation
GO:0031122 IEAInterProcytoplasmic microtubule organization
GO:0007017 IEAInterPromicrotubule-based process
GO:0010103 IEAPLAZA Integrative Orthologystomatal complex morphogenesisAT3G61650
GO:0033566 IEAPLAZA Integrative Orthologygamma-tubulin complex localizationAT5G05620
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT3G61650
GO:0051641 IEAPLAZA Integrative Orthologycellular localizationAT3G61650
GO:0009624 IEAPLAZA Integrative Orthologyresponse to nematodeAT3G61650
GO:0009553 IEAPLAZA Integrative Orthologyembryo sac developmentAT3G61650
GO:0090063 IEAPLAZA Integrative Orthologypositive regulation of microtubule nucleationAT5G05620
GO:0048229 IEAPLAZA Integrative Orthologygametophyte developmentAT5G05620
GO:0048768 IEAPLAZA Integrative Orthologyroot hair cell tip growthAT3G61650
GO:0000911 IEAPLAZA Integrative Orthologycytokinesis by cell plate formationAT3G61650
GO:0000914 IEAPLAZA Integrative Orthologyphragmoplast assemblyAT3G61650

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003924 IEAInterProGTPase activity
GO:0005525 IEAInterProGTP binding
GO:0005200 IEAPLAZA Homology (enrichment)structural constituent of cytoskeleton

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000930 IEAInterProgamma-tubulin complex
GO:0005874 IEAInterPromicrotubule
GO:0055028 IEAPLAZA Integrative Orthologycortical microtubuleAT5G05620
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G05620
GO:0005618 IEAPLAZA Integrative Orthologycell wallAT5G05620
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT3G61650
GO:0005938 IEAPLAZA Integrative Orthologycell cortexAT3G61650
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT3G61650
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G61650
GO:0005635 IEAPLAZA Integrative Orthologynuclear envelopeAT5G05620
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT3G61650

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002454Gamma tubulin
IPR018316Tubulin/FtsZ, 2-layer sandwich domain
IPR003008Tubulin/FtsZ, GTPase domain
IPR000217Tubulin
IPR017975Tubulin, conserved site
IPR008280Tubulin/FtsZ, C-terminal

Mapman id Description
20.1.2.1.1.Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).gamma tubulin component TUG1
No SignalP domains detected for this gene.