PLAZA 4.0 Monocots gene overview : ATR0064G034

Gene: ATR0064G034 (Amborella trichopoda)

Overview

Gene Identifier: ATR0064G034
Transcript Identifier: ATR0064G034.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00110 : 2077994-2078666 : negative

Family

Gene family: HOM04M000019
(2055 genes in 28 species)
specific family
Subfamily: ORTHO04M000093
(534 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00110.120
id	evm_27.TU.AmTr_v1.0_scaffold00110.120.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00110.120
name	evm_27.model.AmTr_v1.0_scaffold00110.120
pacid	31552873
tid	evm_27.model.AmTr_v1.0_scaffold00110.120.v1.0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	PLAZA Homology (enrichment)	carbohydrate metabolic process
GO:0009408	IEA	PLAZA Integrative Orthology	response to heat	AT5G08000
GO:0052543	IEA	PLAZA Integrative Orthology	callose deposition in cell wall	AT5G61130

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0001872	IEA	PLAZA Integrative Orthology	(1->3)-beta-D-glucan binding	AT5G61130
GO:0004553	IEA	PLAZA Homology (enrichment)	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030247	IEA	PLAZA Integrative Orthology	polysaccharide binding	AT5G61130

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT5G61130
GO:0009505	IEA	PLAZA Integrative Orthology	plant-type cell wall	AT5G61130
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT5G61130
GO:0031225	IEA	PLAZA Integrative Orthology	anchored component of membrane	AT5G61130
GO:0046658	IEA	PLAZA Integrative Orthology	anchored component of plasma membrane	AT5G61130

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012946	X8 domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.