Gene: ATR0048G029 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0048G029
Transcript Identifier
ATR0048G029.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00148 : 69564-79162 : negative

Family

Gene family
HOM04M001313
(111 genes in 29 species)
specific family
Subfamily
ORTHO04M004561
(45 genes in 26 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00148.5
idevm_27.TU.AmTr_v1.0_scaffold00148.5.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00148.5
nameevm_27.model.AmTr_v1.0_scaffold00148.5
pacid31556766
tidevm_27.model.AmTr_v1.0_scaffold00148.5.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006810 IEAInterProtransport
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT1G80680
GO:0009870 IEAPLAZA Integrative Orthologydefense response signaling pathway, resistance gene-dependentAT1G80680
GO:0006406 IEAPLAZA Integrative OrthologymRNA export from nucleusAT1G80680

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G80680

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005643 IEAInterPronuclear pore
GO:0031965 IEAPLAZA Integrative Orthologynuclear membraneAT1G80680
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G80680
GO:0005635 IEAPLAZA Integrative Orthologynuclear envelopeAT1G80680

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR007230Peptidase S59, nucleoporin
IPR021967Nuclear protein 96

Mapman id Description
23.5.1.1.1.4.Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP96)
No SignalP domains detected for this gene.