Gene: ATR0043G032 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0043G032
Transcript Identifier
ATR0043G032.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00140 : 1015233-1021987 : positive

Family

Gene family
HOM04M000014
(2446 genes in 27 species)
specific family
Subfamily
ORTHO04M000022
(1115 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00140.39
idevm_27.TU.AmTr_v1.0_scaffold00140.39.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00140.39
nameevm_27.model.AmTr_v1.0_scaffold00140.39
pacid31569232
tidevm_27.model.AmTr_v1.0_scaffold00140.39.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0010029 IEAPLAZA Integrative Orthologyregulation of seed germinationAT5G04410
GO:0016441 IEAPLAZA Integrative Orthologyposttranscriptional gene silencingAT3G10490
GO:0010228 IEAPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT3G10480
GO:0010468 IEAPLAZA Integrative Orthologyregulation of gene expressionAT5G04410
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT5G04410
GO:0048527 IEAPLAZA Integrative Orthologylateral root developmentAT5G04410
GO:0009723 IEAPLAZA Integrative Orthologyresponse to ethyleneAT5G04410
GO:0042542 IEAPLAZA Integrative Orthologyresponse to hydrogen peroxideAT5G04410
GO:0009962 IEAPLAZA Integrative Orthologyregulation of flavonoid biosynthetic processAT5G04410
GO:0045995 IEAPLAZA Integrative Orthologyregulation of embryonic developmentAT5G04410
GO:0010150 IEAPLAZA Integrative Orthologyleaf senescenceAT5G04410
GO:0009644 IEAPLAZA Integrative Orthologyresponse to high light intensityAT5G04410
GO:0090400 IEAPLAZA Integrative Orthologystress-induced premature senescenceAT5G04410
GO:0006351 IEAPLAZA Integrative Orthologytranscription, DNA-templatedAT3G10480
GO:0080060 IEAPLAZA Integrative Orthologyintegument developmentAT5G04410
GO:1904250 IEAPLAZA Integrative Orthologypositive regulation of age-related resistanceAT5G04410
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT5G04410
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT3G10480
GO:0006979 IEAPLAZA Integrative Orthologyresponse to oxidative stressAT5G04410
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT5G04410
GO:0051091 IEAPLAZA Integrative Orthologypositive regulation of sequence-specific DNA binding transcription factor activityAT5G04410
GO:0009753 IEAPLAZA Integrative Orthologyresponse to jasmonic acidAT5G04410
GO:1900057 IEAPLAZA Integrative Orthologypositive regulation of leaf senescenceAT5G04410
GO:0009555 IEAPLAZA Integrative Orthologypollen developmentAT3G10490
GO:0048317 IEAPLAZA Integrative Orthologyseed morphogenesisAT5G04410
GO:0043068 IEAPLAZA Integrative Orthologypositive regulation of programmed cell deathAT5G04410
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G04410
GO:1902074 IEAPLAZA Integrative Orthologyresponse to saltAT5G04410

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT5G04410
GO:0003700 IEAPLAZA Integrative Orthologytranscription factor activity, sequence-specific DNA bindingAT3G10480
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT5G04410
GO:0000976 IEAPLAZA Integrative Orthologytranscription regulatory region sequence-specific DNA bindingAT3G10480
GO:0044212 IEAPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT5G04410

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT5G04410
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G04410
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT3G10490

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003441NAC domain

Mapman id Description
15.5.17.RNA biosynthesis.transcriptional regulation.transcription factor (NAC)
No SignalP domains detected for this gene.