Gene: ATR0043G010 (Amborella trichopoda)

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Gene Identifier
ATR0043G010
Transcript Identifier
ATR0043G010.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00140 : 807447-834526 : negative

Family

Gene family
HOM04M000587
(212 genes in 29 species)
specific family
Subfamily
ORTHO04M000984
(124 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00140.32
idevm_27.TU.AmTr_v1.0_scaffold00140.32.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00140.32
nameevm_27.model.AmTr_v1.0_scaffold00140.32
pacid31569219
tidevm_27.model.AmTr_v1.0_scaffold00140.32.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0055114 IEAInterProoxidation-reduction process
GO:0015996 IEAPLAZA Integrative Orthologychlorophyll catabolic processAT3G44880
GO:0019447 IEAPLAZA Integrative OrthologyD-cysteine catabolic processAT3G44880
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT3G44880
GO:0008219 IEAPLAZA Integrative Orthologycell deathAT3G44880
GO:0009816 IEAPLAZA Integrative Orthologydefense response to bacterium, incompatible interactionAT3G44880
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionAT3G44880
GO:0009693 IEAPLAZA Integrative Orthologyethylene biosynthetic processAT3G44880
GO:0010154 IEAPLAZA Integrative Orthologyfruit developmentAT3G44880

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016491 IEAInterProoxidoreductase activity
GO:0051537 IEAInterPro2 iron, 2 sulfur cluster binding
GO:0010277 IEAInterProchlorophyllide a oxygenase [overall] activity
GO:0050897 IEAPLAZA Integrative Orthologycobalt ion bindingAT3G44880
GO:0019148 IEAPLAZA Integrative OrthologyD-cysteine desulfhydrase activityAT3G44880
GO:0032441 IEAPLAZA Integrative Orthologypheophorbide a oxygenase activityAT3G44880

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT3G44880
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT3G44880
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT3G44880
GO:0009706 IEAPLAZA Integrative Orthologychloroplast inner membraneAT3G44880
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT3G44880
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidAT3G44880

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR017941Rieske [2Fe-2S] iron-sulphur domain
IPR013626Pheophorbide a oxygenase

Mapman id Description
7.12.6.7.5.Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.pheophorbide a oxygenase (PAO)
No SignalP domains detected for this gene.