Gene: ATR0022G045 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0022G045
Transcript Identifier
ATR0022G045.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00135 : 732635-736172 : negative

Family

Gene family
HOM04M000101
(848 genes in 29 species)
specific family
Subfamily
ORTHO04M003369
(56 genes in 26 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00135.33
idevm_27.TU.AmTr_v1.0_scaffold00135.33.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00135.33
nameevm_27.model.AmTr_v1.0_scaffold00135.33
pacid31560926
tidevm_27.model.AmTr_v1.0_scaffold00135.33.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016567 IEAInterProprotein ubiquitination
GO:0009638 IEAPLAZA Integrative OrthologyphototropismAT5G64330
GO:0010087 IEAPLAZA Integrative Orthologyphloem or xylem histogenesisAT5G10250
GO:0048367 IEAPLAZA Integrative Orthologyshoot system developmentAT5G10250
GO:0080022 IEAPLAZA Integrative Orthologyprimary root developmentAT5G10250
GO:0010588 IEAPLAZA Integrative Orthologycotyledon vascular tissue pattern formationAT5G10250
GO:0009785 IEAPLAZA Integrative Orthologyblue light signaling pathwayAT5G64330
GO:0010305 IEAPLAZA Integrative Orthologyleaf vascular tissue pattern formationAT5G10250

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT5G64330

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR029959Root phototropism protein 3-like
IPR027356NPH3 domain
IPR000210BTB/POZ domain
IPR011333SKP1/BTB/POZ domain

Mapman id Description
19.2.2.8.2.2.1.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ligase complexes.BTB/POZ substrate adaptor components.component NPH3
No SignalP domains detected for this gene.