Gene: ATR0021G052 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0021G052
Transcript Identifier
ATR0021G052.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00138 : 383991-474830 : negative

Family

Gene family
HOM04M002874
(57 genes in 29 species)
specific family
Subfamily
ORTHO04M003981
(50 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00138.19
idevm_27.TU.AmTr_v1.0_scaffold00138.19.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00138.19
nameevm_27.model.AmTr_v1.0_scaffold00138.19
pacid31552606
tidevm_27.model.AmTr_v1.0_scaffold00138.19.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048268 IEAInterProclathrin coat assembly
GO:0007165 IEAInterProsignal transduction
GO:0035196 IEAPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT1G24706
GO:1990428 IEAPLAZA Integrative OrthologymiRNA transportAT1G24706

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005545 IEAInterPro1-phosphatidylinositol binding
GO:0030276 IEAInterProclathrin binding
GO:0005543 IEAInterProphospholipid binding
GO:0000155 IEAInterProphosphorelay sensor kinase activity
GO:0003723 IEAPLAZA Integrative OrthologyRNA bindingAT1G24706

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030136 IEAInterProclathrin-coated vesicle
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G24706
GO:0016607 IEAPLAZA Integrative Orthologynuclear speckAT1G24706

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR008942ENTH/VHS
IPR014712Phosphoinositide-binding clathrin adaptor, domain 2
IPR021726THO complex, subunitTHOC2, N-terminal
IPR021418THO complex, subunitTHOC2, C-terminal
IPR032302THO complex subunit 2, N-terminal domain
IPR011417AP180 N-terminal homology (ANTH) domain
IPR013809ENTH domain
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain

Mapman id Description
16.11.1.1.2.RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC2/Tho2
No SignalP domains detected for this gene.