PLAZA 4.0 Monocots gene overview : ATR0001G061

Gene: ATR0001G061 (Amborella trichopoda)

Overview

Gene Identifier: ATR0001G061
Transcript Identifier: ATR0001G061.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00133 : 164989-167184 : positive

Family

Gene family: HOM04M000054
(1357 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00133.5
id	evm_27.TU.AmTr_v1.0_scaffold00133.5.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00133.5
name	evm_27.model.AmTr_v1.0_scaffold00133.5
pacid	31565011
tid	evm_27.model.AmTr_v1.0_scaffold00133.5.v1.0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0048446	IEA	PLAZA Integrative Orthology	petal morphogenesis	AT1G59640
GO:0006355	IEA	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT1G59640

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0046983	IEA	InterPro	protein dimerization activity
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT5G62610

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Mapman id	Description
15.5.32	.RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
26.1.2.1.2	.External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.transcriptional regulator (CIB)

No SignalP domains detected for this gene.