Gene: ATR0001G007 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0001G007
Transcript Identifier
ATR0001G007.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00133 : 1350174-1351185 : negative

Family

Gene family
HOM04M001399
(105 genes in 29 species)
specific family
Subfamily
ORTHO04M012728
(7 genes in 5 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00133.50
idevm_27.TU.AmTr_v1.0_scaffold00133.50.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00133.50
nameevm_27.model.AmTr_v1.0_scaffold00133.50
pacid31565046
tidevm_27.model.AmTr_v1.0_scaffold00133.50.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006696 IEAInterProergosterol biosynthetic process
GO:0009058 IEAInterProbiosynthetic process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004310 IEAInterProfarnesyl-diphosphate farnesyltransferase activity
GO:0051996 IEAInterProsqualene synthase activity
GO:0016740 IEAInterProtransferase activity
GO:0016765 IEAInterProtransferase activity, transferring alkyl or aryl (other than methyl) groups

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR033904Trans-Isoprenyl Diphosphate Synthases, head-to-head
IPR008949Isoprenoid synthase domain
IPR002060Squalene/phytoene synthase
IPR019845Squalene/phytoene synthase, conserved site

Mapman id Description
9.1.6.1.1.Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.phytoene synthase (PSY)
No SignalP domains detected for this gene.