Gene: AT5G66350 (Arabidopsis thaliana)

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Gene Identifier
AT5G66350
Transcript Identifier
AT5G66350.2
Gene Type
Coding gene
Location
Chr5 : 26503256-26506143 : negative

Family

Gene family
HOM04M000833
(160 genes in 27 species)
specific family
Subfamily
ORTHO04M000717
(154 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Lateral root primordium (LRP) protein-like protein
Curated Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
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Identifiers

Type Value
full_nameSHORT INTERNODES
symbolSHI
tidAT5G66350.2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAGene Ontologyregulation of transcription, DNA-templated1
GO:0007275 IEAUniProtmulticellular organism development1
GO:0009734 IEAUniProtauxin-activated signaling pathway1
GO:0009851 IEAUniProtauxin biosynthetic process1
GO:0009739 IMPUniProtresponse to gibberellin1
GO:0009740 TASUniProtgibberellic acid mediated signaling pathway1
GO:0009938 IDAUniProtnegative regulation of gibberellic acid mediated signaling pathway1 2
GO:0009733 IEAPLAZA Tree-based Orthologyresponse to auxinAT5G12330
GO:0048480 IEAPLAZA Integrative Orthologystigma developmentAT3G51060
GO:0048479 IEAPLAZA Integrative Orthologystyle developmentAT3G51060
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT3G51060
GO:0010051 IEAPLAZA Integrative Orthologyxylem and phloem pattern formationAT3G51060
GO:0009299 IEAPLAZA Tree-based OrthologymRNA transcriptionAT1G19790
GO:0048467 IEAPLAZA Tree-based Orthologygynoecium developmentAT1G75520
GO:0010252 IEAPLAZA Integrative Orthologyauxin homeostasisAT3G51060
GO:0048364 IEAPLAZA Tree-based Orthologyroot developmentAT5G12330

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAUniProtDNA binding1
GO:0046872 IEAUniProtmetal ion binding1
GO:0003700 TASUniProttranscription factor activity, sequence-specific DNA binding1
GO:0046982 IPIUniProtprotein heterodimerization activity1
GO:0042803 IEAPLAZA Tree-based Orthologyprotein homodimerization activityAT5G12330

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISS, ISM, TASUniProtnucleus1 2

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007818SHI protein family
IPR006511SHORT INTERNODES, C-terminal
IPR006510Zinc finger, lateral root primordium type 1

Mapman id Description
15.5.47.RNA biosynthesis.transcriptional regulation.transcription factor (SRS)
No SignalP domains detected for this gene.