Gene: AT5G63110 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G63110
Transcript Identifier
AT5G63110.1
Gene Type
Coding gene
Location
Chr5 : 25315834-25318227 : negative

Family

Gene family
HOM04M000721
(181 genes in 29 species)
specific family
Subfamily
ORTHO04M000710
(155 genes in 29 species)
specific family

Descriptions

Description
histone deacetylase 6
Curated Summary
RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.
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Identifiers

Type Value
AliasATHDA6,HISTONE DEACETYLASE 6,AXE1,RPD3B,RTS1,RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1,SIL1
symbolHDA6
tidAT5G63110.1
UniProtQ9FML2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016575 IMP, ISS, IEA, UniProthistone deacetylation1 2
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0016441 IMPUniProtposttranscriptional gene silencing1
GO:0009651 IMPUniProtresponse to salt stress1
GO:0009737 IMPUniProtresponse to abscisic acid1
GO:0009793 IMPUniProtembryo development ending in seed dormancy1
GO:0010431 IMPUniProtseed maturation1
GO:0010228 IMPUniProtvegetative to reproductive phase transition of meristem1
GO:0016458 IMPUniProtgene silencing1
GO:0009845 IEAPLAZA Integrative Orthologyseed germinationAT5G35600
GO:0009553 IEAPLAZA Integrative Orthologyembryo sac developmentAT5G35600

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004407 IMP, ISS, IEA, UniProthistone deacetylase activity1 2
GO:0032041 IEAUniProtNAD-dependent histone deacetylase activity (H3-K14 specific)1
GO:0005515 IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, IEA, ISM, ISS, UniProtnucleus1 2 3
GO:0005730 IEAUniProtnucleolus1
GO:0009941 IDAUniProtchloroplast envelope1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023801Histone deacetylase domain
IPR000286Histone deacetylase superfamily
IPR003084Histone deacetylase

Mapman id Description
12.3.2.1.1.Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase
No SignalP domains detected for this gene.