PLAZA 4.0 Monocots gene overview : AT5G63110

Gene: AT5G63110 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G63110
Transcript Identifier: AT5G63110.1
Gene Type: Coding gene
Location: Chr5 : 25315834-25318227 : negative

Family

Gene family: HOM04M000721
(181 genes in 29 species)
specific family
Subfamily: ORTHO04M000710
(155 genes in 29 species)
specific family

Descriptions

Description: histone deacetylase 6

Curated Summary: RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.

Identifiers

Type	Value
Alias	ATHDA6,HISTONE DEACETYLASE 6,AXE1,RPD3B,RTS1,RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1,SIL1
symbol	HDA6
tid	AT5G63110.1
UniProt	Q9FML2

Toolbox

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016575	IMP, ISS, IEA,	UniProt	histone deacetylation	1 2
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006355	IEA	UniProt	regulation of transcription, DNA-templated	1
GO:0016441	IMP	UniProt	posttranscriptional gene silencing	1
GO:0009651	IMP	UniProt	response to salt stress	1
GO:0009737	IMP	UniProt	response to abscisic acid	1
GO:0009793	IMP	UniProt	embryo development ending in seed dormancy	1
GO:0010431	IMP	UniProt	seed maturation	1
GO:0010228	IMP	UniProt	vegetative to reproductive phase transition of meristem	1
GO:0016458	IMP	UniProt	gene silencing	1
GO:0009845	IEA	PLAZA Integrative Orthology	seed germination	AT5G35600
GO:0009553	IEA	PLAZA Integrative Orthology	embryo sac development	AT5G35600

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004407	IMP, ISS, IEA,	UniProt	histone deacetylase activity	1 2
GO:0032041	IEA	UniProt	NAD-dependent histone deacetylase activity (H3-K14 specific)	1
GO:0005515	IPI	Gene Ontology	protein binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, IEA, ISM, ISS,	UniProt	nucleus	1 2 3
GO:0005730	IEA	UniProt	nucleolus	1
GO:0009941	IDA	UniProt	chloroplast envelope	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR023801	Histone deacetylase domain
IPR000286	Histone deacetylase superfamily
IPR003084	Histone deacetylase

Mapman id	Description
12.3.2.1.1	.Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase

No SignalP domains detected for this gene.