Gene: AT5G63080 (Arabidopsis thaliana)

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Gene Identifier
AT5G63080
Transcript Identifier
AT5G63080.1
Gene Type
Coding gene
Location
Chr5 : 25300026-25302321 : negative

Family

Gene family
HOM04M006941
(30 genes in 28 species)
specific family

Descriptions

Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curated Summary
Encodes a HR demethylase that acts as a positive regulator of seed germination in the PHYB-PIL5-SOM pathway.
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Identifiers

Type Value
AliasJMJ20,Jumonji domain-containing protein 20
tidAT5G63080.1
UniProtQ67ZB6

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010030 IGIGene Ontologypositive regulation of seed germination1
GO:0043985 IGIGene Ontologyhistone H4-R3 methylation1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700 ISSGene Ontologytranscription factor activity, sequence-specific DNA binding1
GO:0000987 IDAGene Ontologycore promoter proximal region sequence-specific DNA binding1
GO:0033746 IDAGene Ontologyhistone demethylase activity (H3-R2 specific)1
GO:0033749 IDAGene Ontologyhistone demethylase activity (H4-R3 specific)1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISMGene Ontologynucleus1 2

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003347JmjC domain

Mapman id Description
12.3.3.9.7.Chromatin organisation.histone modifications.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM11)
15.5.29.RNA biosynthesis.transcriptional regulation.transcription factor (JUMONJI)
No SignalP domains detected for this gene.