PLAZA 4.0 Monocots gene overview : AT5G62470

Gene: AT5G62470 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G62470
Transcript Identifier: AT5G62470.2
Gene Type: Coding gene
Location: Chr5 : 25079434-25080858 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: myb domain protein 96

Curated Summary: Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid. Mediates abscisic acid signaling during drought stress response.

Identifiers

Type	Value
Alias	ATMYB96,MYB DOMAIN PROTEIN 96,MYBCOV1
symbol	MYB96
tid	AT5G62470.2
UniProt	Q24JK1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
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...the orthologs using the Integrative Orthology Viewer.
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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0006355	TAS	UniProt	regulation of transcription, DNA-templated	1
GO:0009651	IEP	UniProt	response to salt stress	1
GO:0009737	IEP	UniProt	response to abscisic acid	1
GO:0009751	IEP	UniProt	response to salicylic acid	1
GO:0009414	IMP	UniProt	response to water deprivation	1
GO:0010468	IMP	UniProt	regulation of gene expression	1
GO:0010025	IMP	UniProt	wax biosynthetic process
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT3G47600
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT3G47600
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT3G47600
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT3G47600
GO:0080167	IEA	PLAZA Integrative Orthology	response to karrikin	AT3G47600

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA, ISS,	UniProt	DNA binding	1 2
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.