Gene: AT5G61070 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G61070
Transcript Identifier
AT5G61070.1
Gene Type
Coding gene
Location
Chr5 : 24571297-24574372 : negative

Family

Gene family
HOM04M000821
(162 genes in 29 species)
specific family
Subfamily
ORTHO04M003834
(51 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
histone deacetylase of the RPD3/HDA1 superfamily 18
Curated Summary
Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.
Show more...

Identifiers

Type Value
AliasATHDA18,A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18
symbolHDA18
tidAT5G61070.1
UniProtQ8LRK8

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0016575 ISSGene Ontologyhistone deacetylation1
GO:0006338 ISSUniProtchromatin remodeling1
GO:0045604 IMPUniProtregulation of epidermal cell differentiation1
GO:0010053 IMPUniProtroot epidermal cell differentiation1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004407 IDA, ISS, UniProthistone deacetylase activity1 2
GO:0032041 IEAUniProtNAD-dependent histone deacetylase activity (H3-K14 specific)1
GO:0004402 ISSGene Ontologyhistone acetyltransferase activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, IEAISM, UniProtnucleus1 2
GO:0005737 IDAUniProtcytoplasm1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR023801Histone deacetylase domain
IPR000286Histone deacetylase superfamily

Mapman id Description
12.3.2.1.2.Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase
No SignalP domains detected for this gene.