Gene: AT5G60920 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G60920
Transcript Identifier
AT5G60920.1
Gene Type
Coding gene
Location
Chr5 : 24511466-24513932 : negative

Family

Gene family
HOM04M000577
(214 genes in 27 species)
specific family
Subfamily
ORTHO04M000568
(176 genes in 27 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curated Summary
Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
Show more...

Identifiers

Type Value
full_nameCOBRA
symbolCOB
tidAT5G60920.1
UniProtQ94KT8

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010215 IEA, IMPUniProtcellulose microfibril organization1
GO:0016049 IEAUniProtcell growth
GO:0009825 IMPUniProtmultidimensional cell growth1
GO:0009651 IMPUniProtresponse to salt stress1
GO:0006122 IEAUniProtmitochondrial electron transport, ubiquinol to cytochrome c
GO:0009832 IEAPLAZA Tree-based Orthologyplant-type cell wall biogenesisAT3G29810
GO:0009834 IEAPLAZA Tree-based Orthologyplant-type secondary cell wall biogenesisAT5G15630
GO:0050832 IEAPLAZA Tree-based Orthologydefense response to fungusAT5G60950
GO:0009664 IEAPLAZA Tree-based Orthologyplant-type cell wall organizationAT3G29810
GO:0048316 IEAPLAZA Tree-based Orthologyseed developmentAT3G29810
GO:0010214 IEAPLAZA Tree-based Orthologyseed coat developmentAT3G29810
GO:0048354 IEAPLAZA Tree-based Orthologymucilage biosynthetic process involved in seed coat developmentAT3G29810
GO:0052324 IEAPLAZA Tree-based Orthologyplant-type cell wall cellulose biosynthetic processAT3G29810

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003674 NDGene Ontologymolecular_function1
GO:0009055 IEAUniProtelectron carrier activity
GO:0046872 IEAUniProtmetal ion binding
GO:0008121 IEAUniProtubiquinol-cytochrome-c reductase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031225 IEA, TASUniProtanchored component of membrane1
GO:0005886 IDA, ISM, UniProtplasma membrane1 2
GO:0016328 IEAUniProtlateral plasma membrane1
GO:0009897 ISSUniProtexternal side of plasma membrane1
GO:0009505 IDAUniProtplant-type cell wall1
GO:0046658 IDAUniProtanchored component of plasma membrane1
GO:0009930 IDAUniProtlongitudinal side of cell surface1
GO:0016021 IEAUniProtintegral component of membrane
GO:0005743 IEAUniProtmitochondrial inner membrane
GO:0045275 IEAUniProtrespiratory chain complex III
GO:0005774 IEAPLAZA Tree-based Orthologyvacuolar membraneAT5G15630
GO:0005794 IEAPLAZA Tree-based OrthologyGolgi apparatusAT3G29810

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR006918COBRA, plant

Mapman id Description
21.1.2.2.Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)
No SignalP domains detected for this gene.