Gene: AT5G60600 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G60600
Transcript Identifier
AT5G60600.1
Gene Type
Coding gene
Location
Chr5 : 24359447-24363274 : positive

Family

Gene family
HOM04M005640
(35 genes in 28 species)
specific family

Descriptions

Description
4-hydroxy-3-methylbut-2-enyl diphosphate synthase
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Identifiers

Type Value
AliasCLB4,CHLOROPLAST BIOGENESIS 4,CSB3,CONSTITUTIVE SUBTILISIN 3,GCPE,ISPG
symbolHDS
tidAT5G60600.1
UniProtF4K0E8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016114 IEAUniProtterpenoid biosynthetic process
GO:0055114 IEAInterProoxidation-reduction process
GO:0008299 ISS, IEAGene Ontologyisoprenoid biosynthetic process1
GO:0019288 TASUniProtisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1
GO:0009617 IMPUniProtresponse to bacterium1
GO:0009862 IMPUniProtsystemic acquired resistance, salicylic acid mediated signaling pathway1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003824 IEAInterProcatalytic activity
GO:0046429 IDA, IEA, IGI, ISS, UniProt4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity1 2 3
GO:0005506 IEAUniProtiron ion binding
GO:0051539 IDAUniProt4 iron, 4 sulfur cluster binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0009507 IDAUniProtchloroplast1
GO:0009941 IDAUniProtchloroplast envelope1
GO:0009570 IDAUniProtchloroplast stroma1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013785Aldolase-type TIM barrel
IPR0045884-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
IPR0171784-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical

Mapman id Description
9.1.2.7.Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase
No SignalP domains detected for this gene.