Gene: AT5G57380 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G57380
Transcript Identifier
AT5G57380.1
Gene Type
Coding gene
Location
Chr5 : 23246538-23249289 : negative

Family

Gene family
HOM04M001161
(123 genes in 25 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Fibronectin type III domain-containing protein
Curated Summary
Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3). In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.
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Identifiers

Type Value
full_nameVERNALIZATION INSENSITIVE 3
symbolVIN3
tidAT5G57380.1
UniProtQ9FIE3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0009409 IEPUniProtresponse to cold1
GO:0010048 IMP, IEP, UniProtvernalization response1 2
GO:0045814 IMPUniProtnegative regulation of gene expression, epigenetic1
GO:0051571 IMPUniProtpositive regulation of histone H3-K4 methylation1
GO:0061087 IMPUniProtpositive regulation of histone H3-K27 methylation1
GO:0070417 IEPUniProtcellular response to cold1
GO:0001666 IMPUniProtresponse to hypoxia1
GO:0010228 IEAPLAZA Tree-based Orthologyvegetative to reproductive phase transition of meristemAT4G30200
GO:0016571 IEAPLAZA Tree-based Orthologyhistone methylationAT3G24440
GO:0048575 IEAPLAZA Tree-based Orthologyshort-day photoperiodism, floweringAT3G24440
GO:0048587 IEAPLAZA Tree-based Orthologyregulation of short-day photoperiodism, floweringAT4G30200
GO:0009909 IEAPLAZA Tree-based Orthologyregulation of flower developmentAT3G24440
GO:0032922 IEAPLAZA Tree-based Orthologycircadian regulation of gene expressionAT4G30200
GO:0048572 IEAPLAZA Tree-based Orthologyshort-day photoperiodismAT3G24440
GO:1900111 IEAPLAZA Tree-based Orthologypositive regulation of histone H3-K9 dimethylationAT4G30200
GO:0031062 IEAPLAZA Tree-based Orthologypositive regulation of histone methylationAT3G24440

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0003677 IEAUniProtDNA binding1
GO:0046872 IEAUniProtmetal ion binding1
GO:0035064 IEAPLAZA Tree-based Orthologymethylated histone bindingAT4G30200
GO:0042802 IEAPLAZA Tree-based Orthologyidentical protein bindingAT4G30200

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, UniProtnucleus1 2
GO:0016607 IDAUniProtnuclear speck1
GO:0005677 IDAUniProtchromatin silencing complex1
GO:0031519 IEAPLAZA Tree-based OrthologyPcG protein complexAT4G30200
GO:0009506 IEAPLAZA Tree-based OrthologyplasmodesmaAT4G30200

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003961Fibronectin type III
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain
IPR001965Zinc finger, PHD-type

Mapman id Description
12.3.3.1.2.2.Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)
No SignalP domains detected for this gene.