Gene: AT5G52820 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G52820
Transcript Identifier
AT5G52820.1
Gene Type
Coding gene
Location
Chr5 : 21401423-21404203 : positive

Family

Gene family
HOM04M004209
(43 genes in 28 species)
specific family

Descriptions

Description
WD-40 repeat family protein / notchless protein
Curated Summary
Encodes a NOTCHLESS homolog, a non-ribosomal protein involved in the maturation and assembly of the 60S ribosomal subunit, that is required for female gametogenesis.
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Identifiers

Type Value
AliasAtNLE,NLE,NOTCHLESS
tidAT5G52820.1
UniProtQ9FLX9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000027 IBAGene Ontologyribosomal large subunit assembly1
GO:0009553 IMPGene Ontologyembryo sac development1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0000166 ISSGene Ontologynucleotide binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0005730 IBAGene Ontologynucleolus1
GO:0005840 IBAGene Ontologyribosome1
GO:0080008 ISSGene OntologyCul4-RING E3 ubiquitin ligase complex1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015943WD40/YVTN repeat-like-containing domain
IPR012972NLE
IPR001680WD40 repeat
IPR020472G-protein beta WD-40 repeat
IPR001632G-protein, beta subunit
IPR019775WD40 repeat, conserved site
IPR017986WD40-repeat-containing domain

Mapman id Description
17.1.2.2.1.12.Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.assembly factor (NLE)
No SignalP domains detected for this gene.