PLAZA 4.0 Monocots gene overview : AT5G52471

Gene: AT5G52471 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G52471
Transcript Identifier: AT5G52471.1
Gene Type: RNA gene
Location: Chr5 : 21295736-21295809 : positive

Family

No gene family defined for this gene.

Descriptions

Description: U60.1F,snoRNA

Curated Summary: Encodes a novel C/D box snoRNA expressed in seedlings. The snoRNAs are encoded in the fifth intron of FIB1.

Identifiers

Type	Value
Note	U60.1F,snoRNA
rna_type	snoRNA
symbol	U60.1F
tid	AT5G52471.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0031167	TAS	Gene Ontology	rRNA methylation	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003674	ND	Gene Ontology	molecular_function	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0031428	TAS	Gene Ontology	box C/D snoRNP complex	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.