PLAZA 4.0 Monocots gene overview : AT5G52310

Gene: AT5G52310 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G52310
Transcript Identifier: AT5G52310.1
Gene Type: Coding gene
Location: Chr5 : 21240929-21243326 : positive

Family

Gene family: HOM04M009493
(11 genes in 6 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)

Curated Summary: cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression

Identifiers

Type	Value
Alias	COR78,COLD REGULATED 78,LTI140,RD29A,RESPONSIVE TO DESSICATION 29A
full_name	LOW-TEMPERATURE-INDUCED 78
symbol	LTI78
tid	AT5G52310.1
UniProt	Q06738

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009269	IMP	Gene Ontology	response to desiccation	1
GO:0006970	IGI	UniProt	response to osmotic stress	1
GO:0009409	IEP	UniProt	response to cold	1 2
GO:0009414	IEP	UniProt	response to water deprivation	1 2
GO:0009651	IEP	UniProt	response to salt stress	1 2
GO:0009737	IEP	UniProt	response to abscisic acid	1 2
GO:0007623	IEP	UniProt	circadian rhythm	1 2
GO:2000280	IDA	UniProt	regulation of root development	1 2
GO:0010150	IMP	UniProt	leaf senescence	1
GO:0000302	IEP	UniProt	response to reactive oxygen species	1 2
GO:1902074	IEP	UniProt	response to salt	1 2
GO:0009611	IEP	UniProt	response to wounding	1 2
GO:0009609	IEP	UniProt	response to symbiotic bacterium	1 2
GO:0042538	IEP	UniProt	hyperosmotic salinity response	1
GO:0010555	IEP	UniProt	response to mannitol	1 2
GO:0009738	IEA	PLAZA Integrative Orthology	abscisic acid-activated signaling pathway	AT5G52300

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003674	ND	Gene Ontology	molecular_function	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0005737	IDA	UniProt	cytoplasm	1 2
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT4G25580

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.