Gene: AT5G47370 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G47370
Transcript Identifier
AT5G47370.1
Gene Type
Coding gene
Location
Chr5 : 19216482-19217647 : negative

Family

Gene family
HOM04M000108
(781 genes in 27 species)
specific family
Subfamily
ORTHO04M000221
(318 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Curated Summary
homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.
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Identifiers

Type Value
symbolHAT2
tidAT5G47370.1
UniProtP46601

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 ISS, IEAGene Ontologyregulation of transcription, DNA-templated1
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0009733 IMPUniProtresponse to auxin1
GO:0009734 IEPUniProtauxin-activated signaling pathway1
GO:0009826 IMPUniProtunidimensional cell growth1
GO:0045892 IMPUniProtnegative regulation of transcription, DNA-templated1
GO:0009641 IEPUniProtshade avoidance1
GO:0010321 IEAPLAZA Integrative Orthologyregulation of vegetative phase changeAT4G17460
GO:0048507 IEAPLAZA Integrative Orthologymeristem developmentAT4G17460
GO:0080127 IEAPLAZA Integrative Orthologyfruit septum developmentAT4G17460
GO:0010015 IEAPLAZA Integrative Orthologyroot morphogenesisAT4G17460
GO:0016573 IEAPLAZA Integrative Orthologyhistone acetylationAT4G17460
GO:0010016 IEAPLAZA Integrative Orthologyshoot system morphogenesisAT4G16780
GO:0010017 IEAPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16780
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT4G17460
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT4G17460
GO:0010218 IEAPLAZA Integrative Orthologyresponse to far red lightAT4G16780
GO:0048467 IEAPLAZA Integrative Orthologygynoecium developmentAT4G17460
GO:0003006 IEAPLAZA Integrative Orthologydevelopmental process involved in reproductionAT4G17460
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT4G16780
GO:0009416 IEAPLAZA Integrative Orthologyresponse to light stimulusAT4G17460
GO:0009735 IEAPLAZA Integrative Orthologyresponse to cytokininAT4G16780
GO:0010582 IEAPLAZA Integrative Orthologyfloral meristem determinacyAT4G17460
GO:0008283 IEAPLAZA Integrative Orthologycell proliferationAT4G16780

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700 ISS, IEA, UniProttranscription factor activity, sequence-specific DNA binding1
GO:0043565 IEAUniProtsequence-specific DNA binding1
GO:0003677 ISS, IEA, UniProtDNA binding1
GO:0010485 IEAPLAZA Integrative OrthologyH4 histone acetyltransferase activityAT4G17460
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G17460
GO:0004402 IEAPLAZA Integrative Orthologyhistone acetyltransferase activityAT4G17460
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT4G16780
GO:0043621 IEAPLAZA Integrative Orthologyprotein self-associationAT4G17460
GO:0016407 IEAPLAZA Integrative Orthologyacetyltransferase activityAT4G17460
GO:0010484 IEAPLAZA Integrative OrthologyH3 histone acetyltransferase activityAT4G17460

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEA, ISM, ISS, UniProtnucleus1 2 3
GO:0000123 IEAPLAZA Integrative Orthologyhistone acetyltransferase complexAT4G17460
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT4G17460

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006712HD-ZIP protein, N-terminal
IPR003106Leucine zipper, homeobox-associated
IPR001356Homeobox domain
IPR017970Homeobox, conserved site
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.1.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II)
No SignalP domains detected for this gene.