PLAZA 4.0 Monocots gene overview : AT5G45250

Gene: AT5G45250 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G45250
Transcript Identifier: AT5G45250.1
Gene Type: Coding gene
Location: Chr5 : 18321914-18326022 : negative

Family

Gene family: HOM04M000050
(1385 genes in 23 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: Disease resistance protein (TIR-NBS-LRR class) family

Curated Summary: RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.

Identifiers

Type	Value
full_name	RESISTANT TO P. SYRINGAE 4
symbol	RPS4
tid	AT5G45250.1
UniProt	Q9XGM3

Toolbox

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View

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007165	IEA	UniProt	signal transduction
GO:0006952	IEA, ISSTAS,	UniProt	defense response	1 2
GO:0009626	IMP	UniProt	plant-type hypersensitive response	1
GO:0009870	IDA	UniProt	defense response signaling pathway, resistance gene-dependent	1
GO:0042742	IDA	UniProt	defense response to bacterium	1
GO:0045903	IBA	UniProt	positive regulation of translational fidelity
GO:0010114	IEA	PLAZA Integrative Orthology	response to red light	AT5G17880
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT5G17880
GO:0009615	IEA	PLAZA Integrative Orthology	response to virus	AT5G44870
GO:0051607	IEA	PLAZA Integrative Orthology	defense response to virus	AT5G44870
GO:0010186	IEA	PLAZA Integrative Orthology	positive regulation of cellular defense response	AT2G03300
GO:0034052	IEA	PLAZA Integrative Orthology	positive regulation of plant-type hypersensitive response	AT1G47370

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0043531	IEA	UniProt	ADP binding	1
GO:0004872	ISS	UniProt	receptor activity	1
GO:0019843	IBA	UniProt	rRNA binding
GO:0003735	IBA	UniProt	structural constituent of ribosome
GO:0043621	IEA	PLAZA Integrative Orthology	protein self-association	AT1G47370

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, IEA, ISM,	UniProt	nucleus	1 2
GO:0005737	IEA	UniProt	cytoplasm	1
GO:0016020	ISS	UniProt	membrane	1
GO:0012505	IDA	UniProt	endomembrane system	1
GO:0005739	IEA	UniProt	mitochondrion
GO:0005840	IEA	UniProt	ribosome
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT4G23510

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
IPR002182	NB-ARC
IPR011713	Leucine-rich repeat 3
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
26.8.2.1	.External stimuli response.pathogen.effector-triggered immunity (ETI) network.effector receptor (NLR)

No SignalP domains detected for this gene.