Gene: AT5G45250 (Arabidopsis thaliana)

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Gene Identifier
AT5G45250
Transcript Identifier
AT5G45250.1
Gene Type
Coding gene
Location
Chr5 : 18321914-18326022 : negative

Family

Gene family
HOM04M000050
(1385 genes in 23 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

Description
Disease resistance protein (TIR-NBS-LRR class) family
Curated Summary
RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.
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Identifiers

Type Value
full_nameRESISTANT TO P. SYRINGAE 4
symbolRPS4
tidAT5G45250.1
UniProtQ9XGM3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007165 IEAUniProtsignal transduction
GO:0006952 IEA, ISSTAS, UniProtdefense response1 2
GO:0009626 IMPUniProtplant-type hypersensitive response1
GO:0009870 IDAUniProtdefense response signaling pathway, resistance gene-dependent1
GO:0042742 IDAUniProtdefense response to bacterium1
GO:0045903 IBAUniProtpositive regulation of translational fidelity
GO:0010114 IEAPLAZA Integrative Orthologyresponse to red lightAT5G17880
GO:0009416 IEAPLAZA Integrative Orthologyresponse to light stimulusAT5G17880
GO:0009615 IEAPLAZA Integrative Orthologyresponse to virusAT5G44870
GO:0051607 IEAPLAZA Integrative Orthologydefense response to virusAT5G44870
GO:0010186 IEAPLAZA Integrative Orthologypositive regulation of cellular defense responseAT2G03300
GO:0034052 IEAPLAZA Integrative Orthologypositive regulation of plant-type hypersensitive responseAT1G47370

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0043531 IEAUniProtADP binding1
GO:0004872 ISSUniProtreceptor activity1
GO:0019843 IBAUniProtrRNA binding
GO:0003735 IBAUniProtstructural constituent of ribosome
GO:0043621 IEAPLAZA Integrative Orthologyprotein self-associationAT1G47370

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, IEA, ISM, UniProtnucleus1 2
GO:0005737 IEAUniProtcytoplasm1
GO:0016020 ISSUniProtmembrane1
GO:0012505 IDAUniProtendomembrane system1
GO:0005739 IEAUniProtmitochondrion
GO:0005840 IEAUniProtribosome
GO:0005773 IEAPLAZA Integrative OrthologyvacuoleAT4G23510

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR032675Leucine-rich repeat domain, L domain-like
IPR000157Toll/interleukin-1 receptor homology (TIR) domain
IPR002182NB-ARC
IPR011713Leucine-rich repeat 3
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
26.8.2.1.External stimuli response.pathogen.effector-triggered immunity (ETI) network.effector receptor (NLR)
No SignalP domains detected for this gene.