PLAZA 4.0 Monocots gene overview : AT5G42190

Gene: AT5G42190 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G42190
Transcript Identifier: AT5G42190.1
Gene Type: Coding gene
Location: Chr5 : 16854495-16855516 : negative

Family

Gene family: HOM04M000290
(360 genes in 29 species)
specific family
Subfamily: ORTHO04M000184
(347 genes in 29 species)
specific family

Descriptions

Description: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Curated Summary: Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.

Identifiers

Type	Value
Alias	ASK2,Arabidopsis SKP-like 2,SKP1B
tid	AT5G42190.1
UniProt	Q9FHW7

Toolbox

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006511	TAS, IEA	Gene Ontology	ubiquitin-dependent protein catabolic process	1
GO:0007059	IEA	Gene Ontology	chromosome segregation	1
GO:0009734	IEA	Gene Ontology	auxin-activated signaling pathway	1
GO:0009873	IEA	Gene Ontology	ethylene-activated signaling pathway	1
GO:0016032	IEA	Gene Ontology	viral process	1
GO:0016567	IEA	Gene Ontology	protein ubiquitination	1
GO:0009793	IGI	Gene Ontology	embryo development ending in seed dormancy	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004842	ISS	Gene Ontology	ubiquitin-protein transferase activity	1
GO:0005515	IPI	Gene Ontology	protein binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM	Gene Ontology	nucleus	1 2
GO:0005737	NAS	Gene Ontology	cytoplasm	1
GO:0019005	NAS	Gene Ontology	SCF ubiquitin ligase complex	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR016073	SKP1 component, POZ domain
IPR016072	SKP1 component, dimerisation
IPR016897	S-phase kinase-associated protein 1
IPR001232	S-phase kinase-associated protein 1-like
IPR011333	SKP1/BTB/POZ domain

Mapman id	Description
19.2.2.8.1.1	.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.target protein binding component SKP1/ASK1

No SignalP domains detected for this gene.