PLAZA 4.0 Monocots gene overview : AT5G26660

Gene: AT5G26660 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G26660
Transcript Identifier: AT5G26660.1
Gene Type: Coding gene
Location: Chr5 : 9331775-9333044 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: myb domain protein 86

Identifiers

Type	Value
Alias	ATMYB86,myb domain protein 86
symbol	MYB86
tid	AT5G26660.1
UniProt	Q8LPH6

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0045892	TAS	Gene Ontology	negative regulation of transcription, DNA-templated	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	UniProt	DNA binding
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IBA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.