PLAZA 4.0 Monocots gene overview : AT5G24590

Gene: AT5G24590 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G24590
Transcript Identifier: AT5G24590.2
Gene Type: Coding gene
Location: Chr5 : 8416920-8418723 : negative

Family

Gene family: HOM04M000014
(2446 genes in 27 species)
specific family
Subfamily: ORTHO04M000022
(1115 genes in 27 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: TCV-interacting protein

Curated Summary: Member of NAc protein family. Interacts with turnip crinkle virus (TCV) capsid protein. Transcription factor involved in regulating the defense response of Arabidopsis to TCV.

Identifiers

Type	Value
Alias	ANAC091,Arabidopsis NAC domain containing protein 91
symbol	TIP
tid	AT5G24590.2
UniProt	Q9LKG8

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	Gene Ontology	regulation of transcription, DNA-templated	1
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0007275	ISS	Gene Ontology	multicellular organism development	1
GO:0051607	IEA, IPI,	UniProt	defense response to virus	1 2
GO:0002230	IDA, IMP,	UniProt	positive regulation of defense response to virus by host	1 2 3
GO:0002237	IEP	UniProt	response to molecule of bacterial origin	1 2
GO:0009615	IEP	UniProt	response to virus	1 2
GO:0016032	IMP	UniProt	viral process	1 2
GO:0009814	IEA	PLAZA Integrative Orthology	defense response, incompatible interaction	AT3G49530
GO:1900103	IEA	PLAZA Integrative Orthology	positive regulation of endoplasmic reticulum unfolded protein response	AT3G49530
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT3G49530
GO:0070417	IEA	PLAZA Integrative Orthology	cellular response to cold	AT3G49530

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IDA, IEA,	UniProt	DNA binding	1
GO:0003713	IDA	UniProt	transcription coactivator activity	1
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0003700	IDA, ISS,	UniProt	transcription factor activity, sequence-specific DNA binding	1 2
GO:0044212	IPI	UniProt	transcription regulatory region DNA binding	1 2
GO:0043621	IEA	PLAZA Integrative Orthology	protein self-association	AT3G49530

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2
GO:0012505	IEA	UniProt	endomembrane system	1
GO:0016021	IEA	UniProt	integral component of membrane	1
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT3G49530

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003441	NAC domain

Mapman id	Description
15.5.17	.RNA biosynthesis.transcriptional regulation.transcription factor (NAC)

No SignalP domains detected for this gene.