PLAZA 4.0 Monocots gene overview : AT5G24330

Gene: AT5G24330 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G24330
Transcript Identifier: AT5G24330.1
Gene Type: Coding gene
Location: Chr5 : 8295245-8296997 : negative

Family

Gene family: HOM04M002480
(65 genes in 27 species)
specific family

Descriptions

Description: TRITHORAX-RELATED PROTEIN 6

Curated Summary: Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.

Identifiers

Type	Value
Alias	SDG34,SET DOMAIN PROTEIN 34
full_name	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
symbol	ATXR6
tid	AT5G24330.1
UniProt	Q9FNE9

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	ISS	Gene Ontology	regulation of transcription, DNA-templated	1
GO:0009901	IMP	UniProt	anther dehiscence	1
GO:0051726	IEP	UniProt	regulation of cell cycle	1
GO:0070734	IDA	UniProt	histone H3-K27 methylation	1
GO:0006275	IGI	UniProt	regulation of DNA replication	1
GO:0009294	IEA	PLAZA Tree-based Orthology	DNA mediated transformation	AT5G09790
GO:0009555	IEA	PLAZA Tree-based Orthology	pollen development	AT5G09790

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0003677	ISS	Gene Ontology	DNA binding	1
GO:0008270	IEA	Gene Ontology	zinc ion binding	1
GO:0046976	IDA	UniProt	histone methyltransferase activity (H3-K27 specific)	1
GO:0046872	IEA	UniProt	metal ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2
GO:0009507	IEA	PLAZA Tree-based Orthology	chloroplast	AT5G09790

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR001214	SET domain
IPR019787	Zinc finger, PHD-finger
IPR019786	Zinc finger, PHD-type, conserved site
IPR001965	Zinc finger, PHD-type
IPR011011	Zinc finger, FYVE/PHD-type

Mapman id	Description
12.3.3.6	.Chromatin organisation.histone modifications.histone lysine methylation.class IV histone methyltransferase

No SignalP domains detected for this gene.