Gene: AT5G23260 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G23260
Transcript Identifier
AT5G23260.1
Gene Type
Coding gene
Location
Chr5 : 7836294-7838340 : positive

Family

Gene family
HOM04M000038
(1510 genes in 29 species)
specific family
Subfamily
ORTHO04M000013
(1412 genes in 29 species)
specific family

Descriptions

Description
K-box region and MADS-box transcription factor family protein
Curated Summary
Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA. Plays a maternal role in fertilization and seed development.
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Identifiers

Type Value
AliasABS,ARABIDOPSIS BSISTER,AGL32,AGAMOUS-like 32
full_nameTRANSPARENT TESTA16
symbolTT16
tidAT5G23260.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045944 IEAUniProtpositive regulation of transcription from RNA polymerase II promoter1
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0000165 IEAGene OntologyMAPK cascade1
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0009813 IEAGene Ontologyflavonoid biosynthetic process1
GO:0008360 IMPUniProtregulation of cell shape1
GO:2000029 IMPUniProtregulation of proanthocyanidin biosynthetic process1
GO:0048316 IMP, IGI, UniProtseed development1 2
GO:0048481 IMP, IGI, UniProtplant ovule development1 2
GO:0080155 IGIUniProtregulation of double fertilization forming a zygote and endosperm1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000977 IEAUniProtRNA polymerase II regulatory region sequence-specific DNA binding1
GO:0003677 IEAInterProDNA binding
GO:0046983 IEAUniProtprotein dimerization activity1
GO:0003700 IEA, IMPISS, UniProttranscription factor activity, sequence-specific DNA binding1 2 3
GO:0005515 IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEA, ISM, UniProtnucleus1 2

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR033896MADS MEF2-like
IPR002100Transcription factor, MADS-box
IPR002487Transcription factor, K-box

Mapman id Description
15.5.14.RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)
No SignalP domains detected for this gene.