PLAZA 4.0 Monocots gene overview : AT5G22650

Gene: AT5G22650 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G22650
Transcript Identifier: AT5G22650.1
Gene Type: Coding gene
Location: Chr5 : 7534120-7536054 : positive

Family

Gene family: HOM04M001820
(84 genes in 26 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: histone deacetylase 2B

Curated Summary: Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.

Identifiers

Type	Value
Alias	ATHD2B,ATHD2,ARABIDOPSIS HISTONE DEACETYLASE 2,HD2,HISTONE DEACETYLASE 2,HDA4,HDT02,HDT2
symbol	HD2B
tid	AT5G22650.1
UniProt	Q56WH4

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0045892	IDA	UniProt	negative regulation of transcription, DNA-templated	1
GO:0009944	IMP	UniProt	polarity specification of adaxial/abaxial axis	1
GO:0009294	IMP	UniProt	DNA mediated transformation	1
GO:0010162	IEP	UniProt	seed dormancy process	1
GO:0009737	IEA	PLAZA Tree-based Orthology	response to abscisic acid	AT5G03740
GO:0009651	IEA	PLAZA Tree-based Orthology	response to salt stress	AT5G03740
GO:0030422	IEA	PLAZA Tree-based Orthology	production of siRNA involved in RNA interference	AT2G27840
GO:0009414	IEA	PLAZA Tree-based Orthology	response to water deprivation	AT5G03740

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004407	ISS	UniProt	histone deacetylase activity	1
GO:0003676	IEA	PLAZA Homology (enrichment)	nucleic acid binding
GO:0043565	IEA	PLAZA Tree-based Orthology	sequence-specific DNA binding	AT5G03740

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0005730	IDA, TAS,	UniProt	nucleolus	1 2
GO:0005618	IDA	UniProt	cell wall	1
GO:0005774	IDA	UniProt	vacuolar membrane	1
GO:0005829	IDA	UniProt	cytosol	1
GO:0005739	IDA	UniProt	mitochondrion	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
12.3.2.2	.Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase

No SignalP domains detected for this gene.