Gene: AT5G22260 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G22260
Transcript Identifier
AT5G22260.1
Gene Type
Coding gene
Location
Chr5 : 7367707-7370192 : negative

Family

Gene family
HOM04M001032
(135 genes in 29 species)
specific family

Descriptions

Description
RING/FYVE/PHD zinc finger superfamily protein
Curated Summary
Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.
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Identifiers

Type Value
full_namemale sterility 1
symbolMS1
tidAT5G22260.1
UniProtQ9FMS5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 ISSGene Ontologyregulation of transcription, DNA-templated1
GO:0009846 IMPUniProtpollen germination1
GO:0010208 IMPUniProtpollen wall assembly1
GO:0022414 IMPUniProtreproductive process1
GO:0045893 IMPUniProtpositive regulation of transcription, DNA-templated1
GO:0048655 IMPUniProtanther wall tapetum morphogenesis1
GO:0055046 IMPUniProtmicrogametogenesis1
GO:0071367 IEPUniProtcellular response to brassinosteroid stimulus1
GO:0050667 IBAUniProthomocysteine metabolic process
GO:0046686 IEPUniProtresponse to cadmium ion
GO:0009651 IEPUniProtresponse to salt stress
GO:0010043 IEPUniProtresponse to zinc ion

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 ISSGene OntologyDNA binding1
GO:0003700 ISSGene Ontologytranscription factor activity, sequence-specific DNA binding1 AGRICOLA_IND:IND23242106
GO:0008270 IDA, IEA, UniProtzinc ion binding1
GO:0003871 IBAUniProt5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
GO:0005507 IDAUniProtcopper ion binding
GO:0008705 IDAUniProtmethionine synthase activity
GO:0046872 IEAUniProtmetal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739 ISMGene Ontologymitochondrion1
GO:0005634 IDAUniProtnucleus1
GO:0048046 IDAUniProtapoplast
GO:0009507 IDAUniProtchloroplast
GO:0009570 IDAUniProtchloroplast stroma
GO:0005829 IDAUniProtcytosol
GO:0016020 IDAUniProtmembrane
GO:0005777 IDAUniProtperoxisome
GO:0005886 IDAUniProtplasma membrane
GO:0009506 IDAUniProtplasmodesma
GO:0005774 IDAUniProtvacuolar membrane

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
13.3.6.1.3.Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.regulatory protein (MMD1/DUET)
15.5.30.RNA biosynthesis.transcriptional regulation.transcription factor (PHD)
No SignalP domains detected for this gene.