Gene: AT5G22250 (Arabidopsis thaliana)

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Gene Identifier
AT5G22250
Transcript Identifier
AT5G22250.1
Gene Type
Coding gene
Location
Chr5 : 7365605-7366441 : negative

Family

Gene family
HOM04M000414
(276 genes in 28 species)
specific family
Subfamily
ORTHO04M000852
(135 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
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Identifiers

Type Value
AliasAtCAF1b,CCR4- associated factor 1b
full_nameCCR4- associated factor 1b
NotePolynucleotidyl transferase, ribonuclease H-like superfamily protein
symbolCAF1b
tidAT5G22250.1
UniProtQ9FMS6

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAGene Ontologytranscription, DNA-templated1
GO:0006355 IEAGene Ontologyregulation of transcription, DNA-templated1
GO:0009451 ISSGene OntologyRNA modification1
GO:0000289 IMPGene Ontologynuclear-transcribed mRNA poly(A) tail shortening1
GO:0042742 IEPGene Ontologydefense response to bacterium1
GO:0002213 IEAPLAZA Integrative Orthologydefense response to insectAT3G44260
GO:0009611 IEAPLAZA Integrative Orthologyresponse to woundingAT3G44260

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0000175 IBAGene Ontology3'-5'-exoribonuclease activity1
GO:0003723 IEAGene OntologyRNA binding1
GO:0004535 IEAGene Ontologypoly(A)-specific ribonuclease activity1
GO:0004540 ISSGene Ontologyribonuclease activity1
GO:0046872 IEAGene Ontologymetal ion binding1
GO:0008408 IDAGene Ontology3'-5' exonuclease activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEA, ISMGene Ontologynucleus1 2
GO:0005737 IEAGene Ontologycytoplasm1
GO:0030014 IBAGene OntologyCCR4-NOT complex1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012337Ribonuclease H-like domain
IPR006941Ribonuclease CAF1

Mapman id Description
16.8.2.1.2.2.RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1
No SignalP domains detected for this gene.