Gene: AT5G21150 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G21150
Transcript Identifier
AT5G21150.1
Gene Type
Coding gene
Location
Chr5 : 7193472-7198113 : positive

Family

Gene family
HOM04M000162
(549 genes in 29 species)
specific family
Subfamily
ORTHO04M001217
(106 genes in 26 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
Argonaute family protein
Curated Summary
AGO9-dependent sRNA silencing is crucial to specify cell fate in the Arabidopsis ovule. AGO9 is expressed in reproductive companion cells but not in the associated male or female gametes or their precursors. Therefore, AGO9 acts non-cell autonomously to silencing the activity of TEs activity in the female gametophyte.
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Identifiers

Type Value
full_nameARGONAUTE 9
symbolAGO9
tidAT5G21150.1
UniProtQ84VQ0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010529 IMPUniProtnegative regulation of transposition1
GO:0048481 IMPUniProtplant ovule development1
GO:0009554 IMPUniProtmegasporogenesis1 2
GO:1904159 IMPUniProtmegasporocyte differentiation1 2
GO:0051607 IDAUniProtdefense response to virus1 2
GO:0031047 IEAUniProtgene silencing by RNA
GO:0006355 IEAUniProtregulation of transcription, DNA-templated
GO:0006417 IEAUniProtregulation of translation
GO:0006351 IEAUniProttranscription, DNA-templated
GO:0016458 IEAPLAZA Tree-based Orthologygene silencingAT2G27040
GO:0010495 IEAPLAZA Tree-based Orthologylong-distance posttranscriptional gene silencingAT2G27040
GO:0070919 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in chromatin silencing by small RNAAT2G27040
GO:0080188 IEAPLAZA Tree-based OrthologyRNA-directed DNA methylationAT2G27040
GO:0006342 IEAPLAZA Tree-based Orthologychromatin silencingAT2G32940
GO:0009816 IEAPLAZA Tree-based Orthologydefense response to bacterium, incompatible interactionAT2G27040
GO:0006306 IEAPLAZA Tree-based OrthologyDNA methylationAT2G32940
GO:0019048 IEAPLAZA Tree-based Orthologymodulation by virus of host morphology or physiologyAT2G27040
GO:0030422 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in RNA interferenceAT2G32940
GO:0051567 IEAPLAZA Tree-based Orthologyhistone H3-K9 methylationAT2G27040
GO:0031048 IEAPLAZA Tree-based Orthologychromatin silencing by small RNAAT2G27040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0005515 IEAInterProprotein binding
GO:0035197 IDAUniProtsiRNA binding1
GO:0035198 IEAPLAZA Tree-based OrthologymiRNA bindingAT2G27040
GO:0003682 IEAPLAZA Tree-based Orthologychromatin bindingAT2G27040
GO:0004521 IEAPLAZA Tree-based Orthologyendoribonuclease activityAT2G27040

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, UniProtnucleus1 2 3
GO:0005737 IDAUniProtcytoplasm1
GO:0030529 IEAUniProtintracellular ribonucleoprotein complex
GO:0015030 IEAPLAZA Tree-based OrthologyCajal bodyAT2G27040
GO:0005730 IEAPLAZA Tree-based OrthologynucleolusAT2G27040
GO:0005654 IEAPLAZA Tree-based OrthologynucleoplasmAT2G27040
GO:0005719 IEAPLAZA Tree-based Orthologynuclear euchromatinAT2G27040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012337Ribonuclease H-like domain
IPR032474Protein argonaute, N-terminal
IPR003165Piwi domain
IPR032472Argonaute linker 2 domain
IPR014811Argonaute, linker 1 domain
IPR003100PAZ domain

Mapman id Description
12.5.1.13.Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO)
No SignalP domains detected for this gene.