Gene: AT5G21030 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G21030
Transcript Identifier
AT5G21030.1
Gene Type
Coding gene
Location
Chr5 : 7139892-7144272 : negative

Family

Gene family
HOM04M000162
(549 genes in 29 species)
specific family
Subfamily
ORTHO04M001217
(106 genes in 26 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
PAZ domain-containing protein / piwi domain-containing protein
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Identifiers

Type Value
tidAT5G21030.1
UniProtQ3E984

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAGene Ontologytranscription, DNA-templated1
GO:0006355 IEAGene Ontologyregulation of transcription, DNA-templated1
GO:0006417 IEAGene Ontologyregulation of translation1
GO:0031047 IEAGene Ontologygene silencing by RNA1
GO:1904159 IEAPLAZA Integrative Orthologymegasporocyte differentiationAT5G21150
GO:0009554 IEAPLAZA Integrative OrthologymegasporogenesisAT5G21150
GO:0006342 IEAPLAZA Tree-based Orthologychromatin silencingAT2G32940
GO:0051607 IEAPLAZA Integrative Orthologydefense response to virusAT5G21150
GO:0019048 IEAPLAZA Tree-based Orthologymodulation by virus of host morphology or physiologyAT2G27040
GO:0048481 IEAPLAZA Integrative Orthologyplant ovule developmentAT5G21150
GO:0030422 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in RNA interferenceAT2G32940
GO:0051567 IEAPLAZA Tree-based Orthologyhistone H3-K9 methylationAT2G27040
GO:0016458 IEAPLAZA Tree-based Orthologygene silencingAT2G27040
GO:0010495 IEAPLAZA Tree-based Orthologylong-distance posttranscriptional gene silencingAT2G27040
GO:0070919 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in chromatin silencing by small RNAAT2G27040
GO:0080188 IEAPLAZA Tree-based OrthologyRNA-directed DNA methylationAT2G27040
GO:0009816 IEAPLAZA Tree-based Orthologydefense response to bacterium, incompatible interactionAT2G27040
GO:0006306 IEAPLAZA Tree-based OrthologyDNA methylationAT2G32940
GO:0010529 IEAPLAZA Integrative Orthologynegative regulation of transpositionAT5G21150
GO:0031048 IEAPLAZA Tree-based Orthologychromatin silencing by small RNAAT2G27040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0005515 IEAInterProprotein binding
GO:0003723 IEAGene OntologyRNA binding1
GO:0004521 IEAPLAZA Tree-based Orthologyendoribonuclease activityAT2G27040
GO:0035198 IEAPLAZA Tree-based OrthologymiRNA bindingAT2G27040
GO:0035197 IEAPLAZA Integrative OrthologysiRNA bindingAT5G21150
GO:0003682 IEAPLAZA Tree-based Orthologychromatin bindingAT2G27040

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0030529 IEAGene Ontologyintracellular ribonucleoprotein complex1
GO:0015030 IEAPLAZA Tree-based OrthologyCajal bodyAT2G27040
GO:0005730 IEAPLAZA Tree-based OrthologynucleolusAT2G27040
GO:0005654 IEAPLAZA Tree-based OrthologynucleoplasmAT2G27040
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT5G21150
GO:0005719 IEAPLAZA Tree-based Orthologynuclear euchromatinAT2G27040

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012337Ribonuclease H-like domain
IPR032474Protein argonaute, N-terminal
IPR014811Argonaute, linker 1 domain
IPR003100PAZ domain
IPR032472Argonaute linker 2 domain
IPR003165Piwi domain

Mapman id Description
12.5.1.13.Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO)
No SignalP domains detected for this gene.