Gene: AT5G17960 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G17960
Transcript Identifier
AT5G17960.1
Gene Type
Coding gene
Location
Chr5 : 5945665-5947464 : negative

Family

Gene family
HOM04M000681
(188 genes in 7 species)
specific family
Subfamily
ORTHO04M000835
(138 genes in 3 species)
specific family

Descriptions

Description
Cysteine/Histidine-rich C1 domain family protein
Curated Summary
Encodes a member of a Cys-rich protein family known as C1-clan proteins, that contains C1_2, C1_3 and ZZ/PHD type C1 domains. Its expression is responsive to phytohormones and is affected by biotic (chitin) and different abiotic (salinity, drought, cold and UV) treatments.
Show more...

Identifiers

Type Value
tidAT5G17960.1
UniProtQ9FJG5

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009411 IEPGene Ontologyresponse to UV1 2
GO:0009414 IEPGene Ontologyresponse to water deprivation1 2
GO:0009651 IEPGene Ontologyresponse to salt stress1 2
GO:0009739 IEPGene Ontologyresponse to gibberellin1 2
GO:0009751 IEPGene Ontologyresponse to salicylic acid1 2
GO:0010200 IEPGene Ontologyresponse to chitin1 2
GO:0010224 IEAPLAZA Integrative Orthologyresponse to UV-BAT5G59920
GO:2000033 IEAPLAZA Integrative Orthologyregulation of seed dormancy processAT3G27490
GO:0010029 IEAPLAZA Integrative Orthologyregulation of seed germinationAT3G27490
GO:0055046 IEAPLAZA Tree-based OrthologymicrogametogenesisAT2G17740
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT2G13950
GO:0009561 IEAPLAZA Integrative OrthologymegagametogenesisAT1G55420
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT4G10560

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042393 IEAPLAZA Integrative Orthologyhistone bindingAT3G27490
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT3G27490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT3G13760
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT5G59920
GO:0009506 IEAPLAZA Integrative OrthologyplasmodesmaAT1G35610
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT4G13130

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR004146DC1
IPR001965Zinc finger, PHD-type

Mapman id Description
35.2not assigned.not annotated
No SignalP domains detected for this gene.