Gene: AT5G17790 (Arabidopsis thaliana)

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Gene Identifier
AT5G17790
Transcript Identifier
AT5G17790.1
Gene Type
Coding gene
Location
Chr5 : 5869810-5872671 : negative

Family

Gene family
HOM04M005381
(36 genes in 23 species)
specific family

Descriptions

Description
zinc finger (Ran-binding) family protein
Curated Summary
Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.
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Identifiers

Type Value
full_nameVARIEGATED 3
symbolVAR3
tidAT5G17790.1
UniProtQ8S9K3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009658 IMPUniProtchloroplast organization1
GO:1900871 IMPUniProtchloroplast mRNA modification1 2
GO:0006397 IEAUniProtmRNA processing

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270 IEAGene Ontologyzinc ion binding1
GO:0005515 IPIGene Ontologyprotein binding1
GO:0046872 IEAUniProtmetal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507 IDA, IMP, UniProtchloroplast1 2 3
GO:0009570 IDAUniProtchloroplast stroma1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001876Zinc finger, RanBP2-type

Mapman id Description
16.12.5.3.RNA processing.organelle machinery.RNA editing.RNA editing factor (OZ-type)
No SignalP domains detected for this gene.